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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015848482.1_cds_XP_016510415.1_23253
CDS Infomation

[gene=LOC107827739] [db_xref=GeneID:107827739] [protein=E3 ubiquitin-protein ligase RFWD3-like] [protein_id=XP_016510415.1] [location=join(1524..1575,1857..2086,6448..6573,6670..6759,6831..6875,7717..7797,8518..8581,8685..8743,9507..9617,9763..9899,10048..10087,11262..11324,11759..11952,15904..16387)] [gbkey=CDS]
Sequence

ATGGATAATTCCAAAAGAGGCTATTTACCAATTGACACTGGAATTTCTCTCAATAAAGAT
GATAGCAAGTCTATTTCTGGTTATGTATTCACCTTAAATGATGGTGCAGTCAGTTGGAAA
AGTTCCAAACAAGCTACAGTAGCTTATTCATTGACTGAAGCAGAATATATAGCAGCTAAG
GAAGCTGTATCGATGAAAAAGTTCTTAACTGAACTTGGTGTGGTTCCTTCAATAGAGGGT
GCAGTTCCATTGTTGTGTGACAATATTGGAGCCATTGCTCAATTTTCAAGTGTTAATACT
TCCATTATCTTCCACCTTTTATTCTTTTGCAGCTGCCTTCCTTGTGGGCATATATATGGT
TTGTCATGTATCAAGAAGTGGTTGCAACAAAAAGGAAGTTTAGGAAAGTGCCCTCAATGT
AATAAGAAATGCACATTGAAGGGTGTCCGAGTGCTTTATGCTTCTCGTCTTCATGCTGTT
GATGAAGAGCTTCAAAAGAAAATCCGGTCCCTTGAATCTAAACGTTTTTCTCTTGAAAAA
GAGTGCAGTGATTGGTGTAAGAAAGAAGTTGAGTGGAGGAGGAGAGAAGCTGAGTTGCAT
AAGCAAGTGGAGCACCTCAAAGAGAGAATAACTTGTGTAGAGGGCTCGCTAAGTGAGATG
CAGAGCAGGTCATCTGGACACATTTTTGGAAGCAATATTGACTCCAAATTGGGAAGACGT
GAATATGCGAATGCTTTTGTTTTACAGAAAGAATTTCAGATTGATGGTGCTCGCCTATTT
GATGTGGATAGCAACGGTGAGAATTTGATGATTGCTAGAAGGCTCGCTGGAATGGGAGGA
CAGCATATGCTTACGAAAATCAGCCTATTACCTCCGCATGAAAGAGAAGACATTCTGCTT
CCTGCGAGCATGAAAACTATCAAGGACTTGCATGTTTCTCCTCATGAAAGGGTCATACTC
TTGGCTTCCTTAGGGAAGAAGTTGTCAGTTCTTAGTGCTGAAAACAACCATACTGTTCTG
ACATACGACTTACCGACTGTTCCTTGGTCATGTTCGTGGGATCCCAACAATTCGCATTAC
ATGTATGCCGGATTACAGAATGGTATGGTTTTGCAGTTTGATGGACGTCAAACTACGAGG
CCAGTGGAATGTATGACTGGGTTGACAGGCAATCCTATTCATACTGTGTGCTCTCTTTCA
GCTGATCCTACACTTAGTGCCGGCGTCAGAAGTGTTCTTTCTGCATCTTCAGTAGGCTTG
TGCCACTGGAACTTCGGTAGCGGTGAAGAAAGGCCGTGCTTGGTTCCTGAATCAGAGAAT
CAAGGAATCTGTATATCTCTCGCTTGTGGAGATAGAAATGATGACATAGTTGCCTCTTTC
CGTCCTAAACTGGAGACCATTGGTGACATGGCTGCTTCTCAAGTACCGCTTACTCCTCCA
GTAACGGAGCAAGCGGTGGAGGGTTCTCATGTTCTTTACAGGAGAGTGGGTAGCAGATAC
CAGAAGTTAGGAGCTTCTTGTGCCAAAGTGAGTGGCATTCGACTTCCAAAATCTGCTATA
ATAGATAGAGGGAATCAGAACCCCTTGTTTGCTTCTGGTGATGAAGCAACAATGGAACTG
GTGTTACAAGAATTGCCATCTTTAAATGTGGCTCAGCGTGTTAAATCTCTCAACGGTCCT
ATTCGTGATGTGAGGTATACACGCCTCCTAAATACAGGATTGCTTGGTTGTTTGAGTGAC
GATAACTTGCAGATTTGCTCAACCAAGCTTCAATGA

Peptide Sequence

PEP ID

XP_016510415.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase RFWD3-like [Nicotiana tabacum]
Sequence

MDNSKRGYLPIDTGISLNKDDSKSISGYVFTLNDGAVSWKSSKQATVAYSLTEAEYIAAK
EAVSMKKFLTELGVVPSIEGAVPLLCDNIGAIAQFSSVNTSIIFHLLFFCSCLPCGHIYG
LSCIKKWLQQKGSLGKCPQCNKKCTLKGVRVLYASRLHAVDEELQKKIRSLESKRFSLEK
ECSDWCKKEVEWRRREAELHKQVEHLKERITCVEGSLSEMQSRSSGHIFGSNIDSKLGRR
EYANAFVLQKEFQIDGARLFDVDSNGENLMIARRLAGMGGQHMLTKISLLPPHEREDILL
PASMKTIKDLHVSPHERVILLASLGKKLSVLSAENNHTVLTYDLPTVPWSCSWDPNNSHY
MYAGLQNGMVLQFDGRQTTRPVECMTGLTGNPIHTVCSLSADPTLSAGVRSVLSASSVGL
CHWNFGSGEERPCLVPESENQGICISLACGDRNDDIVASFRPKLETIGDMAASQVPLTPP
VTEQAVEGSHVLYRRVGSRYQKLGASCAKVSGIRLPKSAIIDRGNQNPLFASGDEATMEL
VLQELPSLNVAQRVKSLNGPIRDVRYTRLLNTGLLGCLSDDNLQICSTKLQ

Transcript Sequence

Gene sequence data has not been registered.